The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Identifieur interne : 000214 ( Main/Exploration ); précédent : 000213; suivant : 000215The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Auteurs : Ana Hranilovic [Australie] ; Marina Bely [France] ; Isabelle Masneuf-Pomarede [France] ; Vladimir Jiranek [Australie] ; Warren Albertin [France]Source :
- PLoS ONE [ 1932-6203 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Kluyveromyces.
- génétique : ADN fongique, Kluyveromyces, Vitis.
- microbiologie : Vin, Vitis.
- Analyse de regroupements, Domestication, Phylogéographie, Phénotype, Répétitions microsatellites, Écosystème, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal.
- genetics : Kluyveromyces, Vitis.
- growth & development : Kluyveromyces.
- microbiology : Vitis, Wine.
- Cluster Analysis, Domestication, Ecosystem, Evolution, Molecular, Microsatellite Repeats, Phenotype, Phylogeography.
Abstract
The yeast
Url:
DOI: 10.1371/journal.pone.0184652
PubMed: 28910346
PubMed Central: 5599012
Affiliations:
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Le document en format XML
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Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation></author><author><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Bordeaux Sciences Agro, Gradignan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Bordeaux Sciences Agro, Gradignan</wicri:regionArea><wicri:noRegion>Gradignan</wicri:noRegion><wicri:noRegion>Gradignan</wicri:noRegion></affiliation></author><author><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>ENSCBP, Bordeaux INP, Pessac, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>ENSCBP, Bordeaux INP, Pessac</wicri:regionArea><wicri:noRegion>Pessac</wicri:noRegion><wicri:noRegion>Pessac</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cluster Analysis</term><term>DNA, Fungal (genetics)</term><term>Domestication</term><term>Ecosystem</term><term>Evolution, Molecular</term><term>Kluyveromyces (genetics)</term><term>Kluyveromyces (growth & development)</term><term>Microsatellite Repeats</term><term>Phenotype</term><term>Phylogeography</term><term>Vitis (genetics)</term><term>Vitis (microbiology)</term><term>Wine (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term><term>Analyse de regroupements</term><term>Domestication</term><term>Kluyveromyces (croissance et développement)</term><term>Kluyveromyces (génétique)</term><term>Phylogéographie</term><term>Phénotype</term><term>Répétitions microsatellites</term><term>Vin (microbiologie)</term><term>Vitis (génétique)</term><term>Vitis (microbiologie)</term><term>Écosystème</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Kluyveromyces</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Kluyveromyces</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Kluyveromyces</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>Kluyveromyces</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Vin</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Vitis</term><term>Wine</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Domestication</term><term>Ecosystem</term><term>Evolution, Molecular</term><term>Microsatellite Repeats</term><term>Phenotype</term><term>Phylogeography</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term><term>Domestication</term><term>Phylogéographie</term><term>Phénotype</term><term>Répétitions microsatellites</term><term>Écosystème</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The yeast <italic>Lachancea thermotolerans</italic> (formerly <italic>Kluyveromyces thermotolerans</italic>) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into <italic>L</italic>. <italic>thermotolerans</italic> population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of <italic>L</italic>. <italic>thermotolerans</italic> has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel’s test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of <italic>L</italic>. <italic>thermotolerans</italic>, contributing to a better understanding of the population structure, ecology and evolution of this non-<italic>Saccharomyces</italic> yeast.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Sicard, D" uniqKey="Sicard D">D Sicard</name></author><author><name sortKey="Legras, Jl" uniqKey="Legras J">JL Legras</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Borneman, Ar" uniqKey="Borneman A">AR Borneman</name></author><author><name sortKey="Forgan, Ah" uniqKey="Forgan A">AH Forgan</name></author><author><name sortKey="Kolouchova, R" uniqKey="Kolouchova R">R Kolouchova</name></author><author><name sortKey="Fraser, Ja" uniqKey="Fraser J">JA Fraser</name></author><author><name sortKey="Schmidt, Sa" uniqKey="Schmidt S">SA 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Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name></noRegion><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name></country><country name="France"><noRegion><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name></noRegion><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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